BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB015F05LP1|AL426878
(1004 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig381 1114 0.0
3x_Contig1201 306 6e-83
>3x_Contig381
Length = 1399
Score = 1114 bits (561), Expect = 0.0
Identities = 583/589 (98%), Gaps = 1/589 (0%)
Strand = Plus / Plus
Query: 1 gatcccctttacctgatgttc-agcagtgtatttcgtggaaccaacagaagcgaacatcg 59
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 759 gatcccctttacctgatgttccagcagtgtatttcgtggaaccaacagaagcgaacatcg 818
Query: 60 atgcgattgtccaggacttgaaagaagataagtattcagaaacatacatcaatttcacaa 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 atgcgattgtccaggacttgaaagaagataagtattcagaaacatacatcaatttcacaa 878
Query: 120 ctacattgaaaagagatcttttagaaacctttgcaagcaaggcttctgctactggcaagt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 ctacattgaaaagagatcttttagaaacctttgcaagcaaggcttctgctactggcaagt 938
Query: 180 ctgacagaataaaacaagtgtacgatcaatatttggatttcgttgtaacagaaccggaaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 939 ctgacagaataaaacaagtgtacgatcaatatttggatttcgttgtaacagaaccggaaa 998
Query: 240 tgttttcattggagatgcccggcacttatggacttattaataatcctcagagttctgagg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 999 tgttttcattggagatgcccggcacttatggacttattaataatcctcagagttctgagg 1058
Query: 300 acgttatcactaatctatgcgattcaattgctactgggatcttcaatgctatcgtcacaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1059 acgttatcactaatctatgcgattcaattgctactgggatcttcaatgctatcgtcacaa 1118
Query: 360 ttggaactatacctattattagagcacaaaggggtggtgctgctgaaatggtggctcaaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1119 ttggaactatacctattattagagcacaaaggggtggtgctgctgaaatggtggctcaaa 1178
Query: 420 aacttgaaaccaaactgcgtgattatgtcaatggtaccagatcttcagctagtggatcaa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1179 aacttgaaaccaaactgcgtgattatgtcaatggtaccagatcttcagctagtggttcaa 1238
Query: 480 cttcatttgagcggtttgttcttgttatagtggatagaaatattgacattgcttctatgt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1239 cttcatttgagcggtttgttcttgttatagtggatagaaatattgacattgcttctatgt 1298
Query: 540 ttgcacattcctggatttatcaatgtttggtatttgatgttttcaaatt 588
||||||||| ||||||||| ||||||||||| |||||||||| ||||||
Sbjct: 1299 ttgcacattactggatttaacaatgtttggtttttgatgtttacaaatt 1347
>3x_Contig1201
Length = 5468
Score = 306 bits (154), Expect = 6e-83
Identities = 184/190 (96%), Gaps = 4/190 (2%)
Strand = Plus / Plus
Query: 819 gtgacactatacaaattcaagaagctgtgaaaaaattaccacttctcacagctagaaaat 878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 gtgacactatacaaattcaagaagctgtgaaaaaattaccacttctcacagctagaaaat 63
Query: 879 ctaccattgatacacacatgacagttctcgcagggcttttgaaacagcttgaaagc-aag 937
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 64 ctaccattgatacacacatgacagttctcgcagggcttttgaaacagcttgaaagcaaag 123
Query: 938 gsttagattctttctttgagttgg-acaatcttccgattcytctaaaa-cagacaaga-t 994
| |||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||| |
Sbjct: 124 gcttagattctttctttgagttggaacaatcttccgattcttctaaaaccagacaagatt 183
Query: 995 tccttgctgc 1004
||||||||||
Sbjct: 184 tccttgctgc 193
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8452
Number of Sequences: 1807
Number of extensions: 8452
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 2
length of query: 1004
length of database: 10,358,551
effective HSP length: 16
effective length of query: 988
effective length of database: 10,329,639
effective search space: 10205683332
effective search space used: 10205683332
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 50 (99.8 bits)